Name and Affiliation

Martin Hartmann, Senior Scientist
Sustainable Agroecosystems
Institute of Agricultural Sciences
Department of Environmental Systems Science
ETH Zurich
Tannenstrasse 1
8092 Zurich, Switzerland

Profiles


Research Activities & Expertise

  • Molecular microbial ecology: Studying the impact of anthropogenic activities and global change on the biodiversity and functioning of terrestrial ecosystems. Ecosystems under investigation include but are not limited to forests, grassland, farmland, cryosphere habitats, and peatlands. Diversity and metabolic potential of the respective microbiome are often assessed using molecular tools including techniques such as metabarcoding, metagenomics and metatranscriptomics.
  • Soil Sciences: Understanding the role of the microbiome for fundamental soil processes as well as their interaction with host plants below (rhizosphere, endosphere) as well as above ground (phylosphere, dermosphere).
  • Bioinformatics: Developing and customizing software tools for processing next-generation sequencing data sets. Workshops and training schools for analysis of next-generation sequencing data.
  • Integrative Visualization: Developing novel approaches to visualize relationships and interactions in large molecular data sets.

Education

  • PhD ETH Zurich (2006)
  • MSc ETH Zurich (2001)
  • BSc ETH Zurich (1998)

Professional Career

  • Senior Scientist, ETH Zurich (since April 2018)
  • Senior Researcher,  
Research Institute WSL (2016-2018)
  • Research Associate, Research Institute WSL (2015-2018)
  • Research Associate, Agroscope (2013-2015)
  • Research Associate, 
Research Institute WSL (2012-2014)
  • Research Associate, Agroscope (2011-2012)
  • Postdoctoral fellow, University of British Columbia (2007-2011)

  • Postdoctoral fellow, Swiss Federal Research Station ART (2007)

Teaching

  • 8th Argonne Soil Metagenomics Meeting - Data Analysis Workshop, 31 Oct 2016, Argonne National Laboratory, Lemont, Illinois, USA.
  • 3rd Thünen Symposium on Soil Metagenomics - Workshop on bioinformatic tools for soil microbiologists, 14-16 December 2016, Thünen Institute, Braunschweig, Germany.
  • 7th Argonne Soil Metagenomics Meeting - Data Analysis Workshop, 20 Oct 2015, The Hilton Lisle/Naperville, Naperville, Illinois, USA.
  • Training school on bioinformatics for amplicon and shotgun metagenome analysis, 14-18 September 2015, Helmholtz Centre for Infection Research, Braunschweig, Germany.
  • Amplicon based analysis of microbial populations, 23-27 February 2015, mBioinform, Copenhagen, Denmark.
  • 2nd Thünen Symposium on Soil Metagenomics - Workshop on bioinformatic tools for soil microbiologists, 11-13 December 2013, Thünen Institute, Braunschweig, Germany.
  • COST training school ES1103 - Bioinformatics for amplicon and shotgun metagenome analysis, 16-20 September 2013, Heinrich-Heine University Düsseldorf, Düsseldorf, Germany.
  • 5th Swiss Microbial Ecology Meeting 2013 - CUSO StarOmics Metagenomic data analyses, 4 February 2013, Murten, Switzerland.
  • COST training school ES1103 - Bioinformatics for microbial community analysis, 11-14 December 2012, University of Liverpool, Liverpool, UK.
  • International PhD Students Course - Applications in Biodiversity Informatics, 21-24 May 2012, University of Tartu, Tartu, Estonia.


Professional Activities

Where to find me